rs27336939 SNP Detail

Summary

• ID
  rs27336939
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156187955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGC ATCCTTGGTT AATGTTCATC
  Y
  GCCACCCCAG GGCTTCTAAA CAGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37550169	NES08891221	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C	T	T	T	C	T		T	C	T		C
ss320578818	CHEV_2_156171771	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27336939					SNP	C	T	T	C	T	T	T	C	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37550169	NES08891221	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156187955 () rs orientation: forward

Symbol	Name	Function Class
Cnbd2	cyclic nucleotide binding domain containing 2	within coordinates
Gm14253	predicted gene 14253	1167 bp downstream
Rr568246	regulatory region 568246	910 bp distal
Rr568247	regulatory region 568247	1163 bp distal
Tssr27051	transcription start site region 27051	1936 bp downstream
Tssr27052	transcription start site region 27052	1996 bp downstream