rs27336941 SNP Detail

Summary

• ID
  rs27336941
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156187127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATG ATTGGCTTCC GGACTCTACA
  S
  GTTCGGGGGA CTGACTATGC TAAAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37550171	NES08891242	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	C	G	C	C	G	C	G		G	C	C	G		C
ss148070320	ENSMUSSNP5632197	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G						G
ss320578813	CHEV_2_156170943	CHEVERUD	SCREENING_POP	f	SNP												G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27336941					SNP	C	C	G	G	C	G	C	C	G	C	G	G	G	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37550171	NES08891242	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156187127 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cnbd2	cyclic nucleotide binding domain containing 2			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Gm14253	predicted gene 14253			1995 bp downstream
Rr568246	regulatory region 568246			82 bp distal
Rr568247	regulatory region 568247			335 bp distal