rs27336952 SNP Detail

Summary

• ID
  rs27336952
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156185337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGCAACT CTAGAGGCTT
  TCTCAGTCAA GAGCAGAGGC CCAAAACTGG CCAGATTCAT TTTGTGGAAC CAACCGCACG
  CCGTGCACTG ACTTCCTGTC CGAGCCTTGA GTTTACTGTG GAAGATAGTG ACAGAGAGCC
  TCAGTATGCT GCAGTGCCAC AACATGAAAC CAACCCATTT GTCGTCCTCA AGCAGACAGT
  R
  TCACCGCAGG ATAGGGGACC AAGTGCGGTT GCTTGCCTCT GGGAGGAGTG CTCCCTGAGC
  CTGCCTTTGG AGCAGGAAAA GACATAAAAG CTCATCTCAA TGGGGACTAG AAAATCAGGA
  TGAGGGAGGG TGAGACCCCC AGGAGCTCAC TGTAAATTGG AAGTATAACT GGATCGCAAC
  TGACACTTCC TCCCCCACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37550182	NES08891308	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G	G	G	G	G	G	G
ss45360874	mCV23225126	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss148070268	ENSMUSSNP3056379	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27336952					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37550182	NES08891308	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156185337 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cnbd2	cyclic nucleotide binding domain containing 2			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr568246	regulatory region 568246			1382 bp proximal
Rr568247	regulatory region 568247			1434 bp proximal