rs27337680 SNP Detail

Summary

• ID
  rs27337680
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167895170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGATCCC ACCCTGGTGG
  GGTCCATGCT GGCATGATAT CATCTGACAG GCAGGTATCT TGTAAATTGG GCACTCAGCA
  GCCCTGGGTC TCCTGATGAC AGAGGCATTT TATCTTCAGG CTAAGAAATC TCCCTCTGTC
  CCAATGGACC TGGGAGAGTC TCCCTTCCTA TCAGGGCCTG TCTGCCATGT CCGTGGGATT
  R
  GCTAACCTTT CTCCCTAATA GCGGATGTAG AAACAGGAGC CCTAGACTCG GGTTGGTTTT
  TGTTTTTGTT TTGTTTTGGT TTGGTTTGGT TTGGTTTGGT TTTTGGTTTT TGGTTTTTCG
  AGACAAGGTT TCTATGTGCA GTCCTTGCTG TCCTGGAACT CACTCTGTAG ACCAGGCTGG
  CCTCGAACTC AGAAATCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
ss37506319	NES08835388	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
rs27337680					SNP	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37506319	NES08835388	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167895170 () rs orientation: forward

Symbol	Name	Function Class
Rr570863	regulatory region 570863	178 bp distal
Rr570864	regulatory region 570864	355 bp distal
Tssr27824	transcription start site region 27824	1298 bp upstream