rs27337681 SNP Detail

Summary

• ID
  rs27337681
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167895155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTGTTTC CTGTGGGAGG
  ATCCCACCCT GGTGGGGTCC ATGCTGGCAT GATATCATCT GACAGGCAGG TATCTTGTAA
  ATTGGGCACT CAGCAGCCCT GGGTCTCCTG ATGACAGAGG CATTTTATCT TCAGGCTAAG
  AAATCTCCCT CTGTCCCAAT GGACCTGGGA GAGTCTCCCT TCCTATCAGG GCCTGTCTGC
  M
  ATGTCCGTGG GATTGGCTAA CCTTTCTCCC TAATAGCGGA TGTAGAAACA GGAGCCCTAG
  ACTCGGGTTG GTTTTTGTTT TTGTTTTGTT TTGGTTTGGT TTGGTTTGGT TTGGTTTTTG
  GTTTTTGGTT TTTCGAGACA AGGTTTCTAT GTGCAGTCCT TGCTGTCCTG GAACTCACTC
  TGTAGACCAG GCTGGCCTCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	PWD/PhJ	WSB/EiJ
ss37506320	NES08835387	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	C	C	C	C	C
ss148265701	ENSMUSSNP265625	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	PWD/PhJ	WSB/EiJ
rs27337681					SNP	A	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37506320	NES08835387	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167895155 () rs orientation: forward

Symbol	Name	Function Class
Rr570863	regulatory region 570863	163 bp distal
Rr570864	regulatory region 570864	340 bp distal
Tssr27824	transcription start site region 27824	1283 bp upstream