rs27337684 SNP Detail

Summary

• ID
  rs27337684
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167894669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAACTCTA GCCACTGAGA
  GGATGCTCAG GAGCCTGAGC AAGAGTAAGT AACCTCCGAC CTACAGCCCT CCAGGCTGGT
  CACTCCAAGC GGCTGAGGCT CCTGGGAGAC TTCCCCCATC ACAAGGTTCT GTGCTGGGCA
  GTAGCTCAGT TTCAGCAAAG TCACCCTCTC AAACTCATAA GCCACAGGGC ACATTTGCAA
  R
  GATGAATGCA AGTTGCACAG GAAGGCTCTG GCAACAGGCA GTTTCAATGT GATATCCCTT
  TTCTGCCTCC CATTAATGCC CAGAATCCCT GACCCTGGGC AAGGCTTGTC CTGTGATATC
  ATGGGACTCC TCCAGGGGGC GCTGTCCCAT TCTGCACTGG GCAAATGTCT GCTGATGATA
  GGAGCCTTCC CTGCAGAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37506323	NES08835384	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27337684					SNP	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37506323	NES08835384	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167894669 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12760	CpG island 12760	1839 bp distal
Rr406967	regulatory region 406967	1879 bp distal
Rr570862	regulatory region 570862	1834 bp distal
Rr570863	regulatory region 570863	28 bp proximal
Rr570864	regulatory region 570864	125 bp proximal
Tssr27824	transcription start site region 27824	797 bp upstream