rs27337685 SNP Detail

Summary

• ID
  rs27337685
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167894629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGACAAG CTTTAGGCTC
  CAACTTCATC TTGAAATTCT GTGAACTCTA GCCACTGAGA GGATGCTCAG GAGCCTGAGC
  AAGAGTAAGT AACCTCCGAC CTACAGCCCT CCAGGCTGGT CACTCCAAGC GGCTGAGGCT
  CCTGGGAGAC TTCCCCCATC ACAAGGTTCT GTGCTGGGCA GTAGCTCAGT TTCAGCAAAG
  Y
  CACCCTCTCA AACTCATAAG CCACAGGGCA CATTTGCAAG GATGAATGCA AGTTGCACAG
  GAAGGCTCTG GCAACAGGCA GTTTCAATGT GATATCCCTT TTCTGCCTCC CATTAATGCC
  CAGAATCCCT GACCCTGGGC AAGGCTTGTC CTGTGATATC ATGGGACTCC TCCAGGGGGC
  GCTGTCCCAT TCTGCACTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	WSB/EiJ
ss37506324	NES08835383	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	WSB/EiJ
rs27337685					SNP	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37506324	NES08835383	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167894629 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12760	CpG island 12760	1799 bp distal
Rr406967	regulatory region 406967	1839 bp distal
Rr570862	regulatory region 570862	1794 bp distal
Rr570863	regulatory region 570863	68 bp proximal
Rr570864	regulatory region 570864	165 bp proximal
Tssr27824	transcription start site region 27824	757 bp upstream