rs27337686 SNP Detail

Summary

• ID
  rs27337686
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167894478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGCATGGC TCTCAGCCAA
  TAGATTCTTG ACTGTGTAGC ATGCTCCCTA ACACACTAAT GAAACTGAAT ATGGTTGAAG
  TAAATATATA AAGTCAGAAT GAAGACCCGA AAGGCTGTAA GCCAAGCTGA AAGGCTTCCT
  CTTAGTAGAC AGTCAGACAA GCTTTAGGCT CCAACTTCAT CTTGAAATTC TGTGAACTCT
  R
  GCCACTGAGA GGATGCTCAG GAGCCTGAGC AAGAGTAAGT AACCTCCGAC CTACAGCCCT
  CCAGGCTGGT CACTCCAAGC GGCTGAGGCT CCTGGGAGAC TTCCCCCATC ACAAGGTTCT
  GTGCTGGGCA GTAGCTCAGT TTCAGCAAAG TCACCCTCTC AAACTCATAA GCCACAGGGC
  ACATTTGCAA GGATGAATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	WSB/EiJ
ss37506325	NES08835382	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	WSB/EiJ
rs27337686					SNP	A	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37506325	NES08835382	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167894478 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12760	CpG island 12760	1648 bp distal
Rr406967	regulatory region 406967	1688 bp distal
Rr570862	regulatory region 570862	1643 bp distal
Rr570863	regulatory region 570863	219 bp proximal
Rr570864	regulatory region 570864	316 bp proximal
Tssr27824	transcription start site region 27824	606 bp upstream