rs27337687 SNP Detail

Summary

• ID
  rs27337687
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167894334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCAACTCT GAGGCTAGCC
  TAAGCTATAT GAGACCCTGT CTCAAAAAGA AAACAAAGAA AAGACCAGTG CTTTTAGATG
  TTGCCCAAGC TGGCCTTGAA CTCCTAGATT CAAGTGGATT TCCCAAGAAT CTGGACTGCA
  CTGTGTAGCA TGGCTCTCAG CCAATAGATT CTTGACTGTG TAGCATGCTC CCTAACACAC
  W
  AATGAAACTG AATATGGTTG AAGTAAATAT ATAAAGTCAG AATGAAGACC CGAAAGGCTG
  TAAGCCAAGC TGAAAGGCTT CCTCTTAGTA GACAGTCAGA CAAGCTTTAG GCTCCAACTT
  CATCTTGAAA TTCTGTGAAC TCTAGCCACT GAGAGGATGC TCAGGAGCCT GAGCAAGAGT
  AAGTAACCTC CGACCTACAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	WSB/EiJ
ss37506326	NES08835381	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	WSB/EiJ
rs27337687					SNP	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37506326	NES08835381	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167894334 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12760	CpG island 12760	1504 bp distal
Gm57439	predicted gene, 57439	1987 bp upstream
Rr406967	regulatory region 406967	1544 bp distal
Rr570862	regulatory region 570862	1499 bp distal
Rr570863	regulatory region 570863	363 bp proximal
Rr570864	regulatory region 570864	460 bp proximal
Tssr27823	transcription start site region 27823	1986 bp upstream
Tssr27824	transcription start site region 27824	462 bp upstream