rs27337688 SNP Detail

Summary

• ID
  rs27337688
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167893643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGAGGCTA GCCTGAACTA
  CATAGCAAGA CATTCTCAAG CAACAACAGC AACATCAAAA ACCTGTACCC TCAGAATAAG
  CACAGCCACA TGCCTGTAAG ACACGCTCCT GAGTTGCAAC AGCCCTAGGA AGGGTTGCAG
  ACGTAGCTAA GTGAGGAAAG AGCTTGCCTT GTGCTGACCA AATGGAGGTT TCCAAGTCAC
  Y
  TGGTTTAGCT GATGAGTCTC TTCTTTGCGG TATGGTATGG AGGCTTGAAC CCAGAGCCTC
  CTTCACAGAC AGCCCCTGCC CCCACTCCAC CCCCTTCTTT TCCCTTCTGA GGCCAGGATC
  TCACCTGGCT GCTCAGACCA GCCTCAAACC CTTAAACCTC AGGCTCACTC AGTTCTGGTT
  GAGCTTGAAC TTGTGCTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	WSB/EiJ
ss37506327	NES08835392	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	WSB/EiJ
rs27337688					SNP	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37506327	NES08835392	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167893643 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12760	CpG island 12760	813 bp distal
Gm57439	predicted gene, 57439	1296 bp upstream
Rr406967	regulatory region 406967	853 bp distal
Rr570860	regulatory region 570860	1367 bp distal
Rr570861	regulatory region 570861	1510 bp distal
Rr570862	regulatory region 570862	808 bp distal
Rr570863	regulatory region 570863	1054 bp proximal
Rr570864	regulatory region 570864	1151 bp proximal
Tssr27820	transcription start site region 27820	1642 bp upstream
Tssr27821	transcription start site region 27821	1359 bp upstream
Tssr27822	transcription start site region 27822	1323 bp upstream
Tssr27823	transcription start site region 27823	1295 bp upstream
Tssr27824	transcription start site region 27824	223 bp downstream