rs27337690 SNP Detail

Summary

• ID
  rs27337690
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167893325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTTGTTT TTGTTTTCCT
  GAGGCTAGGT CTCAAATAGC CCAGGCTGGC CTCGAATTCA CTATATAGCT GGGGTTGATA
  GACTAAAGCC AACCACCATG CCCAGCTTTG CAGGAACTTT GAACAGCAGG AATACATGCA
  TGCATACATA CATACACACA TATACATACA TGCACACCTT GTAAGAATGG GCTTGTACAG
  S
  AAGTGGAGAG TCGCTTAACT GTCCCCTACA TAACAGCCAG GTGAATAAAA TGAAAGTGAG
  CTGTGACCTG CTGCTGTAAT CCCAGCACTC GGGAGGCTGA AGCAAGGGGG TAGTAAATTG
  GAGGCTAGCC TGAACTACAT AGCAAGACAT TCTCAAGCAA CAACAGCAAC ATCAAAAACC
  TGTACCCTCA GAATAAGCAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37506329	NES08835406	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G		G	G	G	G	G	G	G
ss45313589	mCV22943473	ABI	CRAMUS_MOUSE	f	SNP		C	G			G		G
ss148265660	ENSMUSSNP1596545	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27337690					SNP	C	C	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37506329	NES08835406	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167893325 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12760	CpG island 12760	495 bp distal
Gm57439	predicted gene, 57439	978 bp upstream
Rr406967	regulatory region 406967	535 bp distal
Rr570860	regulatory region 570860	1049 bp distal
Rr570861	regulatory region 570861	1192 bp distal
Rr570862	regulatory region 570862	490 bp distal
Rr570863	regulatory region 570863	1372 bp proximal
Rr570864	regulatory region 570864	1469 bp proximal
Tssr27820	transcription start site region 27820	1324 bp upstream
Tssr27821	transcription start site region 27821	1041 bp upstream
Tssr27822	transcription start site region 27822	1005 bp upstream
Tssr27823	transcription start site region 27823	977 bp upstream
Tssr27824	transcription start site region 27824	541 bp downstream