rs27337691 SNP Detail

Summary

• ID
  rs27337691
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167892936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCACCTCCCG CTCTGCAGGG TGGGGATCCA GAGGGAGGGT
  CCAAGCTTCT GCAGACCCAT TTGGATTTTG GATTTTTTTT TTTTGGTCTT GTCAGTTGCC
  W
  CTTGCCATTC ATTCATTCAT TCATTCACTC ACTCATTCAT TTCTTCTCTC ATCTGTGGGG
  AGAGCGCCCA CGCCAGGACA CACTTGGGAG AGCCAGCTCT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37506330	NES08835435	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	A	T	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27337691					SNP	A	T	T	T	A	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37506330	NES08835435	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167892936 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12760	CpG island 12760	106 bp distal
Gm57439	predicted gene, 57439	589 bp upstream
Rr406967	regulatory region 406967	146 bp distal
Tssr27820	transcription start site region 27820	935 bp upstream
Tssr27821	transcription start site region 27821	652 bp upstream
Tssr27822	transcription start site region 27822	616 bp upstream
Tssr27823	transcription start site region 27823	588 bp upstream
Tssr27824	transcription start site region 27824	930 bp downstream