rs27337692 SNP Detail

Summary

• ID
  rs27337692
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167892802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCGGATT AATCACTCGG
  GGTCCAATGC CTGCCTGGGA TGGAGCGGAG GGGACCTCTG CAAGTTTTCT GTTTACTTAG
  CGCTGCGCGG GGCTGCAGCT AATCACTCGC AGGCAGGGTC GGGCTCCCTC CCTCCAACTT
  CTGCCTTTCC CCTCTTCCCG GCCCTAGCCC CTTTCCAGCT CTTGCCATGG TCTGGTCGGA
  R
  CTGACCTGGA TTCCCAGTAG GAGTTCCCCC TCTGCACCTC CCGCTCTGCA GGGTGGGGAT
  CCAGAGGGAG GGTCCAAGCT TCTGCAGACC CATTTGGATT TTGGATTTTT TTTTTTTGGT
  CTTGTCAGTT GCCACTTGCC ATTCATTCAT TCATTCATTC ACTCACTCAT TCATTTCTTC
  TCTCATCTGT GGGGAGAGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	PWD/PhJ	WSB/EiJ
ss37506331	NES08835434	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A		G	A	G	G	G
ss45251201	mCV22943471	ABI	CRAMUS_MOUSE	f	SNP		G	A			A		A
ss148265650	ENSMUSSNP6635654	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	PWD/PhJ	WSB/EiJ
rs27337692					SNP	G	G	A	A	A	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37506331	NES08835434	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167892802 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12760	CpG island 12760	within coordinates
Gm57439	predicted gene, 57439	455 bp upstream
Rr406967	regulatory region 406967	12 bp distal
Rr570860	regulatory region 570860	526 bp distal
Rr570861	regulatory region 570861	669 bp distal
Rr570862	regulatory region 570862	within coordinates
Rr570863	regulatory region 570863	1895 bp proximal
Rr570864	regulatory region 570864	1992 bp proximal
Tssr27820	transcription start site region 27820	801 bp upstream
Tssr27821	transcription start site region 27821	518 bp upstream
Tssr27822	transcription start site region 27822	482 bp upstream
Tssr27823	transcription start site region 27823	454 bp upstream
Tssr27824	transcription start site region 27824	1064 bp downstream