rs27337693 SNP Detail

Summary

• ID
  rs27337693
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167892503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCAGCCC TCTGACCACC
  GCGGATGCTG GTTCTGGGAA TGCACTCGGT GGCCCCTGTA TCCGGCTGTT CCCGGCTCTG
  GCCGCTGCGA TAGAGCTTAT CTGGCGGGTG TCAGGGTTCA GCGGCCGAGG GACCGGGGTT
  CCCGGAAGCC TCCAGCCCCG GCCCTGCGCC CCCGGATGCC GCGCTGGCCC GTCGTATCAC
  Y
  GCGCTGCGCG GACACTCCTC TGCCGTAGCT GTAGGAGGCC ACCTCCTGCT CCCATCCCGG
  CTGATTCCAA GTCCACGCAA GGCTCTTGGC CCCCCAAAGA CTCGGATTAA TCACTCGGGG
  TCCAATGCCT GCCTGGGATG GAGCGGAGGG GACCTCTGCA AGTTTTCTGT TTACTTAGCG
  CTGCGCGGGG CTGCAGCTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37506332	NES08835433	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C		T	C	C	C	C	C	T
ss45351142	mCV22943470	ABI	CRAMUS_MOUSE	f	SNP		T	C			C		C
ss148265646	ENSMUSSNP1272390	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27337693					SNP	T	T	C	C	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37506332	NES08835433	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167892503 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12760	CpG island 12760	within coordinates
Gm57439	predicted gene, 57439	156 bp upstream
Rr406967	regulatory region 406967	within coordinates
Tssr27820	transcription start site region 27820	502 bp upstream
Tssr27821	transcription start site region 27821	219 bp upstream
Tssr27822	transcription start site region 27822	183 bp upstream
Tssr27823	transcription start site region 27823	155 bp upstream
Tssr27824	transcription start site region 27824	1363 bp downstream