rs27337694 SNP Detail

Summary

• ID
  rs27337694
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167892280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTACACAG CAGTGTTCTC
  TTGGCTCCAA CACAAACTCC CTCTCGTGGC CCTAGGGGTC TAGGTGAGTG TGAGGAAGAG
  GCCCCTCCTC TCTCCACCTG CACGTGCCAG CCTGCTGGTG ACCGCGACGA CACTCACCGT
  GGAGCCGGTC TGGACCTCCG GGACCGAGCT CCGCTGCTGC CCGGCGCCGG CTGGTTGTCA
  Y
  TGACCGCGGG CGGACGGAGC TCCCTGCAGC CCTCTGACCA CCGCGGATGC TGGTTCTGGG
  AATGCACTCG GTGGCCCCTG TATCCGGCTG TTCCCGGCTC TGGCCGCTGC GATAGAGCTT
  ATCTGGCGGG TGTCAGGGTT CAGCGGCCGA GGGACCGGGG TTCCCGGAAG CCTCCAGCCC
  CGGCCCTGCG CCCCCGGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	PWD/PhJ	WSB/EiJ
ss37506333	NES08835432	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	PWD/PhJ	WSB/EiJ
rs27337694					SNP	T	C	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37506333	NES08835432	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167892280 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12760	CpG island 12760	within coordinates
Gm57439	predicted gene, 57439	within coordinates
Rr406967	regulatory region 406967	within coordinates
Tssr27820	transcription start site region 27820	279 bp upstream
Tssr27821	transcription start site region 27821	within coordinates
Tssr27822	transcription start site region 27822	29 bp downstream
Tssr27823	transcription start site region 27823	48 bp downstream
Tssr27824	transcription start site region 27824	1586 bp downstream