rs27338070 SNP Detail

Summary

• ID
  rs27338070
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157404569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAATAAAA AAATGGACCT
  CTCCTGTCTT GTAGTGTCCT AGGACCCTGC AGGGCAGTGG GGGTGCACCA AAAAGTTCTT
  TTGTGGCTTC TTTTGCGACT GCGTCACATT ATCCATAAAG CTGGGCAATG TACTCATTGT
  GGAGGGGCAC ACCACTTGGA ATGGGGAGGG GGACCACAAG AAGACAAGAA TAAACTGAGA
  Y
  GCCCATATCT GCCTCATTTA AATCTGTCCT GAGATAAAGG ACTATTTCTC ATCCGCAATG
  AGAAGAGTGG AATTCATCTG TCCCAGAATA AGGGACATTT TCCCTTCCCC ACGATGATGG
  GTGAATTTAT TTGGTGGTGC CGAGATAAGG TACCATGGCA GGTTTTCTAT CTGGGAAAGA
  TGGAGAGAAA ATAACTGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37546100	NES08901837	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27338070					SNP	T	T	T	T	C	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37546100	NES08901837	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157404569 () rs orientation: forward

Symbol	Name	Function Class
Blcap	bladder cancer associated protein	within coordinates
Cpgi12576	CpG island 12576	950 bp distal
Gm56190	predicted gene, 56190	202 bp upstream
Nnat	neuronatin	127 bp downstream
Rr568544	regulatory region 568544	within coordinates
Tssr721	transcription start site region 721	192 bp upstream
Tssr21270	transcription start site region 21270	1974 bp downstream
Tssr21271	transcription start site region 21271	1860 bp downstream
Tssr21272	transcription start site region 21272	1821 bp downstream
Tssr21273	transcription start site region 21273	1164 bp downstream
Tssr21274	transcription start site region 21274	918 bp downstream
Tssr21275	transcription start site region 21275	866 bp downstream
Tssr21276	transcription start site region 21276	753 bp downstream
Tssr21277	transcription start site region 21277	735 bp downstream
Tssr21278	transcription start site region 21278	702 bp downstream
Tssr21279	transcription start site region 21279	617 bp downstream
Tssr21280	transcription start site region 21280	505 bp downstream
Tssr21281	transcription start site region 21281	431 bp downstream
Tssr21282	transcription start site region 21282	358 bp downstream
Tssr21283	transcription start site region 21283	329 bp downstream
Tssr27183	transcription start site region 27183	1766 bp upstream
Tssr27184	transcription start site region 27184	1676 bp upstream
Tssr27185	transcription start site region 27185	765 bp upstream
Tssr27186	transcription start site region 27186	635 bp upstream