rs27338071 SNP Detail

Summary

• ID
  rs27338071
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157404197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATGGGGGG AGTGGAGGGC
  GTGGGTGGTG GAGGAAGAGG GTTAAGAAAA CTAGTGGGGC CCCCTTGCTG CCCCTTGCCT
  ATGGCACACA TATTCCTGCC TTGCTCCCTC ATTTCCCCTT TTCCCCCCGC CTTCGAAAGC
  CCTCCCCAAA ATGTGTCACT TGATTTGGAT ATATTCAACC AGTAATTGAA TCCCACCTTT
  W
  CCAAAACACG TTCTCTAACC CCCGGCCCTT CACTGATCTT GCTTATCCCT GGTCTCACGC
  AGCAGTTGTG GTCAATATTG TGGTAGTCGC TAATTGTACT GGTTTAAGTG TGCATTAGTA
  GTGTCTCCCC AGCTAGATTG TAAGCTCCTG GAGACAGGGA CCACCTCCAC CAAAAATAAA
  AAAATGGACC TCTCCTGTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37546101	NES08901864	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A	A	A	A	T	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27338071					SNP	A	A	A	A	T	A	A	A	A	T	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37546101	NES08901864	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157404197 () rs orientation: forward

Symbol	Name	Function Class
Blcap	bladder cancer associated protein	within coordinates
Cpgi12575	CpG island 12575	1683 bp distal
Cpgi12576	CpG island 12576	578 bp distal
Gm56190	predicted gene, 56190	84 bp downstream
Nnat	neuronatin	within coordinates
Rr568544	regulatory region 568544	70 bp proximal
Tssr721	transcription start site region 721	164 bp downstream
Tssr21269	transcription start site region 21269	1673 bp downstream
Tssr21270	transcription start site region 21270	1602 bp downstream
Tssr21271	transcription start site region 21271	1488 bp downstream
Tssr21272	transcription start site region 21272	1449 bp downstream
Tssr21273	transcription start site region 21273	792 bp downstream
Tssr21274	transcription start site region 21274	546 bp downstream
Tssr21275	transcription start site region 21275	494 bp downstream
Tssr21276	transcription start site region 21276	381 bp downstream
Tssr21277	transcription start site region 21277	363 bp downstream
Tssr21278	transcription start site region 21278	330 bp downstream
Tssr21279	transcription start site region 21279	245 bp downstream
Tssr21280	transcription start site region 21280	133 bp downstream
Tssr21281	transcription start site region 21281	59 bp downstream
Tssr21282	transcription start site region 21282	3 bp upstream
Tssr21283	transcription start site region 21283	17 bp upstream
Tssr27183	transcription start site region 27183	1394 bp upstream
Tssr27184	transcription start site region 27184	1304 bp upstream
Tssr27185	transcription start site region 27185	393 bp upstream
Tssr27186	transcription start site region 27186	263 bp upstream