rs27338072 SNP Detail

Summary

• ID
  rs27338072
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157403991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGGGGGG AAGAGGGGAG
  CAACCCTCGA GATATGGGCG TAGGCACCAC ATTCTGATCT GGACCAAGTC GGAACAGTAC
  CATCTCAGCC GCACAAGATC CTACCATGAA GATCGAACAG CCCATCAACC AGCAGAATGG
  ACATTCTGAC ATCACCAGCT GAAGCCCTAC ATCTCGGTGC AGAAGAGAAA GTGTCAACTG
  Y
  GTGCAGCATG GGGGGAGTGG AGGGCGTGGG TGGTGGAGGA AGAGGGTTAA GAAAACTAGT
  GGGGCCCCCT TGCTGCCCCT TGCCTATGGC ACACATATTC CTGCCTTGCT CCCTCATTTC
  CCCTTTTCCC CCCGCCTTCG AAAGCCCTCC CCAAAATGTG TCACTTGATT TGGATATATT
  CAACCAGTAA TTGAATCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37546102	NES08901863	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27338072					SNP	T	T	T	T	C	T	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37546102	NES08901863	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157403991 () rs orientation: forward

Symbol	Name	Function Class
Blcap	bladder cancer associated protein	within coordinates
Cpgi12575	CpG island 12575	1477 bp distal
Cpgi12576	CpG island 12576	372 bp distal
Gm56190	predicted gene, 56190	290 bp downstream
Nnat	neuronatin	within coordinates
Rr568543	regulatory region 568543	1931 bp distal
Rr568544	regulatory region 568544	276 bp proximal
Tssr721	transcription start site region 721	370 bp downstream
Tssr21268	transcription start site region 21268	1952 bp downstream
Tssr21269	transcription start site region 21269	1467 bp downstream
Tssr21270	transcription start site region 21270	1396 bp downstream
Tssr21271	transcription start site region 21271	1282 bp downstream
Tssr21272	transcription start site region 21272	1243 bp downstream
Tssr21273	transcription start site region 21273	586 bp downstream
Tssr21274	transcription start site region 21274	340 bp downstream
Tssr21275	transcription start site region 21275	288 bp downstream
Tssr21276	transcription start site region 21276	175 bp downstream
Tssr21277	transcription start site region 21277	157 bp downstream
Tssr21278	transcription start site region 21278	124 bp downstream
Tssr21279	transcription start site region 21279	39 bp downstream
Tssr21280	transcription start site region 21280	37 bp upstream
Tssr21281	transcription start site region 21281	84 bp upstream
Tssr21282	transcription start site region 21282	209 bp upstream
Tssr21283	transcription start site region 21283	223 bp upstream
Tssr27183	transcription start site region 27183	1188 bp upstream
Tssr27184	transcription start site region 27184	1098 bp upstream
Tssr27185	transcription start site region 27185	187 bp upstream
Tssr27186	transcription start site region 27186	57 bp upstream