rs27338073 SNP Detail

Summary

• ID
  rs27338073
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157403960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCCCTGT CCCACTACCG
  GCGGGTGGGA GAGGAGGGGG GAAGAGGGGA GCAACCCTCG AGATATGGGC GTAGGCACCA
  CATTCTGATC TGGACCAAGT CGGAACAGTA CCATCTCAGC CGCACAAGAT CCTACCATGA
  AGATCGAACA GCCCATCAAC CAGCAGAATG GACATTCTGA CATCACCAGC TGAAGCCCTA
  M
  ATCTCGGTGC AGAAGAGAAA GTGTCAACTG TGTGCAGCAT GGGGGGAGTG GAGGGCGTGG
  GTGGTGGAGG AAGAGGGTTA AGAAAACTAG TGGGGCCCCC TTGCTGCCCC TTGCCTATGG
  CACACATATT CCTGCCTTGC TCCCTCATTT CCCCTTTTCC CCCCGCCTTC GAAAGCCCTC
  CCCAAAATGT GTCACTTGAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37546103	NES08901861	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	C	C	C	C	A	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27338073					SNP	C	C	C	C	A	C	C	C	C	A	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37546103	NES08901861	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157403960 () rs orientation: forward

Symbol	Name	Function Class
Blcap	bladder cancer associated protein	within coordinates
Cpgi12575	CpG island 12575	1446 bp distal
Cpgi12576	CpG island 12576	341 bp distal
Gm56190	predicted gene, 56190	321 bp downstream
Nnat	neuronatin	within coordinates
Rr568543	regulatory region 568543	1900 bp distal
Rr568544	regulatory region 568544	307 bp proximal
Tssr721	transcription start site region 721	401 bp downstream
Tssr21268	transcription start site region 21268	1921 bp downstream
Tssr21269	transcription start site region 21269	1436 bp downstream
Tssr21270	transcription start site region 21270	1365 bp downstream
Tssr21271	transcription start site region 21271	1251 bp downstream
Tssr21272	transcription start site region 21272	1212 bp downstream
Tssr21273	transcription start site region 21273	555 bp downstream
Tssr21274	transcription start site region 21274	309 bp downstream
Tssr21275	transcription start site region 21275	257 bp downstream
Tssr21276	transcription start site region 21276	144 bp downstream
Tssr21277	transcription start site region 21277	126 bp downstream
Tssr21278	transcription start site region 21278	93 bp downstream
Tssr21279	transcription start site region 21279	8 bp downstream
Tssr21280	transcription start site region 21280	68 bp upstream
Tssr21281	transcription start site region 21281	115 bp upstream
Tssr21282	transcription start site region 21282	240 bp upstream
Tssr21283	transcription start site region 21283	254 bp upstream
Tssr27183	transcription start site region 27183	1157 bp upstream
Tssr27184	transcription start site region 27184	1067 bp upstream
Tssr27185	transcription start site region 27185	156 bp upstream
Tssr27186	transcription start site region 27186	26 bp upstream