rs27338074 SNP Detail

Summary

• ID
  rs27338074
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157403862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTCAGAGGA GCACTTGCCA
  AGGTCAGTGA GGGGCCGGTA GGCCCCCAGA AAAGCAGCAC CGACAATGAT GAAGATATCA
  GTTCCCTTCC CAGCCCCTTT GCCCCTGTCC CACTACCGGC GGGTGGGAGA GGAGGGGGGA
  AGAGGGGAGC AACCCTCGAG ATATGGGCGT AGGCACCACA TTCTGATCTG GACCAAGTCG
  R
  AACAGTACCA TCTCAGCCGC ACAAGATCCT ACCATGAAGA TCGAACAGCC CATCAACCAG
  CAGAATGGAC ATTCTGACAT CACCAGCTGA AGCCCTACAT CTCGGTGCAG AAGAGAAAGT
  GTCAACTGTG TGCAGCATGG GGGGAGTGGA GGGCGTGGGT GGTGGAGGAA GAGGGTTAAG
  AAAACTAGTG GGGCCCCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37546104	NES08901860	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	A	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27338074					SNP	G	G	G	G	A	G	G	G	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37546104	NES08901860	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157403862 () rs orientation: forward

Symbol	Name	Function Class
Blcap	bladder cancer associated protein	within coordinates
Cpgi12575	CpG island 12575	1348 bp distal
Cpgi12576	CpG island 12576	243 bp distal
Gm56190	predicted gene, 56190	419 bp downstream
Nnat	neuronatin	within coordinates
Rr568543	regulatory region 568543	1802 bp distal
Rr568544	regulatory region 568544	405 bp proximal
Tssr721	transcription start site region 721	499 bp downstream
Tssr21268	transcription start site region 21268	1823 bp downstream
Tssr21269	transcription start site region 21269	1338 bp downstream
Tssr21270	transcription start site region 21270	1267 bp downstream
Tssr21271	transcription start site region 21271	1153 bp downstream
Tssr21272	transcription start site region 21272	1114 bp downstream
Tssr21273	transcription start site region 21273	457 bp downstream
Tssr21274	transcription start site region 21274	211 bp downstream
Tssr21275	transcription start site region 21275	159 bp downstream
Tssr21276	transcription start site region 21276	46 bp downstream
Tssr21277	transcription start site region 21277	28 bp downstream
Tssr21278	transcription start site region 21278	within coordinates
Tssr21279	transcription start site region 21279	87 bp upstream
Tssr21280	transcription start site region 21280	166 bp upstream
Tssr21281	transcription start site region 21281	213 bp upstream
Tssr21282	transcription start site region 21282	338 bp upstream
Tssr21283	transcription start site region 21283	352 bp upstream
Tssr27183	transcription start site region 27183	1059 bp upstream
Tssr27184	transcription start site region 27184	969 bp upstream
Tssr27185	transcription start site region 27185	58 bp upstream
Tssr27186	transcription start site region 27186	37 bp downstream