rs27338075 SNP Detail

Summary

• ID
  rs27338075
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157403036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTAGAGAA AAAAATGCCC
  CTTGCAGGAC AAAAACGGAA GGGGAAAGAA CATTTTCAAA AAAAAAAAAA AAAGAAAGAA
  AGAAAGAAAA AGAAAAAAGA AAGAAAGAAA GAAAGAAAGG GGCAAATCAT TTTATGGAAA
  AAGAGAGTGC GCGATATCGC GCGCAAAAGT GCTTCTCTTA AAGCCAAACT GGAAGAAAGC
  R
  CTTTGTGCAA AAAAAAACTA TCTACCCCAA GAGCTCCCTT TGCAGGAATC CTGCTAAAGG
  AATCCTTTGC CAAAGGAATC GCATATTTCC TTCAAGGTGT TCCTGGAATG CTGCATTTAC
  TGGGTAGGAT TCGCTTTTCG AAATCCTCCA GGGACACAGC CCATTGCGAG AAGTGAGGTA
  TACTTAAGTT GTGGGTCCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37546105	NES08901858	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27338075					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37546105	NES08901858	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157403036 () rs orientation: forward

Symbol	Name	Function Class
Blcap	bladder cancer associated protein	within coordinates
Cpgi12575	CpG island 12575	522 bp distal
Cpgi12576	CpG island 12576	344 bp proximal
Gm56190	predicted gene, 56190	1245 bp downstream
Nnat	neuronatin	within coordinates
Rr568543	regulatory region 568543	976 bp distal
Rr568544	regulatory region 568544	1231 bp proximal
Tssr721	transcription start site region 721	1325 bp downstream
Tssr21268	transcription start site region 21268	997 bp downstream
Tssr21269	transcription start site region 21269	512 bp downstream
Tssr21270	transcription start site region 21270	441 bp downstream
Tssr21271	transcription start site region 21271	327 bp downstream
Tssr21272	transcription start site region 21272	288 bp downstream
Tssr21273	transcription start site region 21273	359 bp upstream
Tssr21274	transcription start site region 21274	601 bp upstream
Tssr21275	transcription start site region 21275	656 bp upstream
Tssr21276	transcription start site region 21276	757 bp upstream
Tssr21277	transcription start site region 21277	786 bp upstream
Tssr21278	transcription start site region 21278	821 bp upstream
Tssr21279	transcription start site region 21279	913 bp upstream
Tssr21280	transcription start site region 21280	992 bp upstream
Tssr21281	transcription start site region 21281	1039 bp upstream
Tssr21282	transcription start site region 21282	1164 bp upstream
Tssr21283	transcription start site region 21283	1178 bp upstream
Tssr27183	transcription start site region 27183	233 bp upstream
Tssr27184	transcription start site region 27184	143 bp upstream
Tssr27185	transcription start site region 27185	736 bp downstream
Tssr27186	transcription start site region 27186	863 bp downstream