rs27338076 SNP Detail

Summary

• ID
  rs27338076
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157402615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGTGAAACT TTACAGTTCG CACAACAGAA AATTTTCACC
  TTAAAAAATT GCGCAATGCA GGAAATTTTC TTTTAAATAC ACTATGTACA CACATATAAC
  W
  CTTGGGTGGG TGAAAAAGAA GTTAGAAAAT GGCACTCCTC AGGAAAAATA ACAAAAAGAA
  TCTCAATAAG GGGGAAAGGG AGGAAATAGA GAAAACGCGC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37546106	NES08901916	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27338076					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37546106	NES08901916	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157402615 () rs orientation: forward

Symbol	Name	Function Class
Blcap	bladder cancer associated protein	within coordinates
Cpgi12575	CpG island 12575	101 bp distal
Cpgi12576	CpG island 12576	765 bp proximal
Gm56190	predicted gene, 56190	1666 bp downstream
Nnat	neuronatin	within coordinates
Rr568541	regulatory region 568541	1825 bp distal
Rr568542	regulatory region 568542	1940 bp distal
Rr568543	regulatory region 568543	555 bp distal
Rr568544	regulatory region 568544	1652 bp proximal
Tssr721	transcription start site region 721	1746 bp downstream
Tssr21268	transcription start site region 21268	576 bp downstream
Tssr21269	transcription start site region 21269	91 bp downstream
Tssr21270	transcription start site region 21270	20 bp downstream
Tssr21271	transcription start site region 21271	70 bp upstream
Tssr21272	transcription start site region 21272	117 bp upstream
Tssr21273	transcription start site region 21273	780 bp upstream
Tssr21274	transcription start site region 21274	1022 bp upstream
Tssr21275	transcription start site region 21275	1077 bp upstream
Tssr21276	transcription start site region 21276	1178 bp upstream
Tssr21277	transcription start site region 21277	1207 bp upstream
Tssr21278	transcription start site region 21278	1242 bp upstream
Tssr21279	transcription start site region 21279	1334 bp upstream
Tssr21280	transcription start site region 21280	1413 bp upstream
Tssr21281	transcription start site region 21281	1460 bp upstream
Tssr21282	transcription start site region 21282	1585 bp upstream
Tssr21283	transcription start site region 21283	1599 bp upstream
Tssr27183	transcription start site region 27183	167 bp downstream
Tssr27184	transcription start site region 27184	274 bp downstream
Tssr27185	transcription start site region 27185	1157 bp downstream
Tssr27186	transcription start site region 27186	1284 bp downstream