rs27338077 SNP Detail

Summary

• ID
  rs27338077
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:157402295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTTTCGG AACCATGGCC
  GCAGTGGCAG CAGCCTCGGC AGAACTGCTC ATCATCGGCT GGTACATCTT CCGCGTGCTG
  CTGCAGGTGA GTATGTACCC GGGCTTTGGG TGGGAGAGGG CACCCGAAAC GCGCCCCGGG
  ACCCCTTAAT CCATATCGCG ATTGCCGCCC CTACCCAACC CATCCTATCC CAATTGCCGC
  R
  ATCCCTGTGT ACCAAAGTGC CGCGGTGGTA CTATTTGTCC CCGCCCGTTC CCGTGCCCAC
  ATCCTCGCGC AGACCCTGTC CCCAGTGCGC CCGCGCCCAG CCGGGAACAA AGACTCAGGG
  GTGCGGCGGT CGCCCGCTGC GGACGATCGC GACCAACGCG GTAAGAAATA CCCGCTATAT
  TCAGGCTCGA TCCCAGGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37546107	NES08901915	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27338077					SNP	A	A	A	A	G	A	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37546107	NES08901915	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157402295 () rs orientation: forward

Symbol	Name	Function Class
Blcap	bladder cancer associated protein	Intron
Cpgi12575	CpG island 12575	within coordinates
Cpgi12576	CpG island 12576	1085 bp proximal
Gm56190	predicted gene, 56190	1986 bp downstream
Nnat	neuronatin	Intron
Rr568541	regulatory region 568541	1505 bp distal
Rr568542	regulatory region 568542	1620 bp distal
Rr568543	regulatory region 568543	235 bp distal
Rr568544	regulatory region 568544	1972 bp proximal
Tssr21268	transcription start site region 21268	256 bp downstream
Tssr21269	transcription start site region 21269	198 bp upstream
Tssr21270	transcription start site region 21270	289 bp upstream
Tssr21271	transcription start site region 21271	390 bp upstream
Tssr21272	transcription start site region 21272	437 bp upstream
Tssr21273	transcription start site region 21273	1100 bp upstream
Tssr21274	transcription start site region 21274	1342 bp upstream
Tssr21275	transcription start site region 21275	1397 bp upstream
Tssr21276	transcription start site region 21276	1498 bp upstream
Tssr21277	transcription start site region 21277	1527 bp upstream
Tssr21278	transcription start site region 21278	1562 bp upstream
Tssr21279	transcription start site region 21279	1654 bp upstream
Tssr21280	transcription start site region 21280	1733 bp upstream
Tssr21281	transcription start site region 21281	1780 bp upstream
Tssr21282	transcription start site region 21282	1905 bp upstream
Tssr21283	transcription start site region 21283	1919 bp upstream
Tssr27183	transcription start site region 27183	487 bp downstream
Tssr27184	transcription start site region 27184	594 bp downstream
Tssr27185	transcription start site region 27185	1477 bp downstream
Tssr27186	transcription start site region 27186	1604 bp downstream