rs27342859 SNP Detail

Summary

• ID
  rs27342859
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147021683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTAAACG ATGAGCCCTA
  ATAAATACGT TTGAGAAATG TCCTTACTCT TGGCAAATAT TGGATTAGCT TTTCAATGAC
  CAGGCTCTTG AAAAGGCTGG AGAAATCCAT GCCAGGTCTC AACTAAGCCC AACAGTCAAT
  AGGTAAGGAA AATAAGTTAT TTCCCTTGTG GGAACGGGGA GTACTGAGAA GGGAGTGTTC
  R
  CTCTATGGAG TTATCTACAT GATGGCATTT CAAAGCACTA AAGGGGACAG AATTTGAGGT
  AACCTGACAT TTTCATCAAT GTAGTGGTGC TTCTACTTTC TCTAGAGATA CACATCCAAT
  TTCTATTTTA TTTTCACAAC GCAGTTTATA CACTTTTTTT GGTTAGAAAA TATGTTGCTT
  ATATGGGTGG TGTTTGTAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37497380	NES08937719	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A		A	G	A	A		G
ss320548186	CHEV_2_147005499	CHEVERUD	SCREENING_POP	f	SNP						A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27342859					SNP	A	A	A	A	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37497380	NES08937719	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147021683 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12376	CpG island 12376	1264 bp distal
Cpgi12377	CpG island 12377	669 bp distal
Cpgi12378	CpG island 12378	1054 bp proximal
Nkx2-2	NK2 homeobox 2	within coordinates
Rr406682	regulatory region 406682	527 bp proximal
Rr566759	regulatory region 566759	180 bp distal
Rr566760	regulatory region 566760	1868 bp distal
Rr566761	regulatory region 566761	1474 bp distal
Rr566762	regulatory region 566762	786 bp distal
Rr566763	regulatory region 566763	930 bp proximal