rs27342864 SNP Detail

Summary

• ID
  rs27342864
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147020937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTT CCTCACCCCA CGTGGTTCTC
  K
  GAGCATTGGA AACGTTCGCT TGCAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37497385	NES08937710	PERLEGEN	MM_PANEL2	f	SNP	G		T	G	T	G	T	G	T	G		T	T	G	G		T
ss147881261	ENSMUSSNP1292475	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T
ss320548180	CHEV_2_147004753	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27342864					SNP	G	G	T	G	T	G	T	G	T	G	T	T	T	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37497385	NES08937710	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147020937 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12376	CpG island 12376	518 bp distal
Cpgi12377	CpG island 12377	within coordinates
Cpgi12378	CpG island 12378	1800 bp proximal
Nkx2-2	NK2 homeobox 2	within coordinates
Rr406682	regulatory region 406682	1273 bp proximal
Rr566759	regulatory region 566759	within coordinates
Rr566760	regulatory region 566760	1122 bp distal
Rr566761	regulatory region 566761	728 bp distal
Rr566762	regulatory region 566762	40 bp distal
Rr566763	regulatory region 566763	1676 bp proximal