rs27342865 SNP Detail

Summary

• ID
  rs27342865
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147020936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCATGGT CAGACACTAA
  CTCTAGTTTT GAGCCTGATT GCCCGTGGTA GCAGGCAGAC TGTGGGAGTA GCACTGCAAT
  CCGGGTGTGT TTGTTTCAGG GACAGAGAGA CTCGGTGGGT CGCTTAAAGA GAAAAGCGCT
  TGGGCGCCTC CTAGCGGCCA CACACGAAAA ATCCTAGTTT TCCTCACCCC ACGTGGTTCT
  S
  GGAGCATTGG AAACGTTCGC TTGCAAGCCC TCCTTTCCGC ACTTGCTCTG ATGGCGGCGC
  TGAGACCTAT TCACCTCTTT TAATAACGAT GCCCTGGGAG GGAAAATATA GAGGCTTTTA
  AAATCCAGAC TCCGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TTGGGGTGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37497386	NES08937709	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27342865					SNP	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37497386	NES08937709	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147020936 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12376	CpG island 12376	517 bp distal
Cpgi12377	CpG island 12377	within coordinates
Cpgi12378	CpG island 12378	1801 bp proximal
Nkx2-2	NK2 homeobox 2	within coordinates
Rr406682	regulatory region 406682	1274 bp proximal
Rr566759	regulatory region 566759	within coordinates
Rr566760	regulatory region 566760	1121 bp distal
Rr566761	regulatory region 566761	727 bp distal
Rr566762	regulatory region 566762	39 bp distal
Rr566763	regulatory region 566763	1677 bp proximal