rs27343469 SNP Detail

Summary

• ID
  rs27343469
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153713730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCCAGAGG CTGGGCAAGA
  AAGGAGGTGC CAACAATCAA GCCACACTCC TTGCTCCTAA GACTCTTTGC TGCCTTAGGC
  TTCCTGGGCT TGAACTCACT GGCTGGTGTT CACATTACAT GAAAAAACAT TCTTTATGCT
  CTTGTTTTAA TAAAGTCCCA CCTTTTTACT AGGGTTAAAA AGAAAGCACC ATAAATGGAA
  R
  TGTCTGGTTA GATTCTAACA CCCCACTCAC CCCCACTTAT CCTTGCCTGA AGCTGATAAT
  TCACTTTTAC TCCCTGATGG CCATGGCTGA GGATCTATGG GATATGGCAT CCCAGGTCCC
  CATGATGGCC TGCTCAATAA AACCTGACCA GAAGGATCTG TTAAGTTGAA CGGTGTAGGG
  AAGCTGGAGC TAGCAGATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37558488	NES08912446	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	G	A		A		A	G		G	G	G	A		A
ss45367079	mCV22915586	ABI	CRAMUS_MOUSE	f	SNP		A	G					A		A
ss320565836	CHEV_2_153697546	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27343469					SNP	A	A	G	A	A	G	A	A	A	A	A	G	G	G	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37558488	NES08912446	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153713730 () rs orientation: forward

Symbol	Name	Function Class
Sun5	Sad1 and UNC84 domain containing 5	726 bp upstream
Tssr26917	transcription start site region 26917	738 bp upstream
Tssr26918	transcription start site region 26918	706 bp upstream