rs27343471 SNP Detail

Summary

• ID
  rs27343471
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153713636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATATTCA AAGCACCCCA
  ACCCTCCCTC AGAGGATGCC ATTGTGACTT ACTTTTCATT TGGAAAATGG GAAGGTGAAG
  CTGTAAGCCA GGGAGGGCCA GAGGCTGGGC AAGAAAGGAG GTGCCAACAA TCAAGCCACA
  CTCCTTGCTC CTAAGACTCT TTGCTGCCTT AGGCTTCCTG GGCTTGAACT CACTGGCTGG
  Y
  GTTCACATTA CATGAAAAAA CATTCTTTAT GCTCTTGTTT TAATAAAGTC CCACCTTTTT
  ACTAGGGTTA AAAAGAAAGC ACCATAAATG GAAATGTCTG GTTAGATTCT AACACCCCAC
  TCACCCCCAC TTATCCTTGC CTGAAGCTGA TAATTCACTT TTACTCCCTG ATGGCCATGG
  CTGAGGATCT ATGGGATATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37558490	NES08912444	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27343471					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37558490	NES08912444	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153713636 () rs orientation: forward

Symbol	Name	Function Class
Sun5	Sad1 and UNC84 domain containing 5	632 bp upstream
Tssr26917	transcription start site region 26917	644 bp upstream
Tssr26918	transcription start site region 26918	612 bp upstream