rs27343473 SNP Detail

Summary

• ID
  rs27343473
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153713073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCAGGTAG GGTACACAAG
  GCCCCGATGT TCCTCGTCCG GGGCATTGAT TTCCTTTTAT AAAGGGCCAA GGATGGAGGT
  CTATGGGAGT CAATGAGGAG GAAGTGGCTG CCACTGCCGC CACCACCATT GAGTATTCCC
  TGGAAGGTGA CATGGAATTT ACTGGGTCAG ATGGAACTGT CAGCTCTGTG ACCTCATAGA
  R
  TACTTGGATG GATCCCAAGT CTCCTGAAAC TTTGTCTCAG TTAGGGTTCC ATTGCTGTGA
  AGAAACGCCA TGACCAGGGA AACTCTGATA AAGACAACAT TTAGTAAAGG CTGGCTTACA
  GGATCAGAAG TTCAGTCCAT TGACATCAAG GCAGGAGCAT GGCAGCATCC AGGCATGCAT
  GGTGCTGGAG GAGCTGAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37558492	NES08912504	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27343473					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37558492	NES08912504	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153713073 () rs orientation: forward

Symbol	Name	Function Class
Sun5	Sad1 and UNC84 domain containing 5	69 bp upstream
Tssr26917	transcription start site region 26917	81 bp upstream
Tssr26918	transcription start site region 26918	49 bp upstream