rs27343475 SNP Detail

Summary

• ID
  rs27343475
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153712996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCCAAGG AACTCTGTAT
  GGGCTGGGAA AGGCAGGAGC TGGCCTCACC TCCTAGGCCT GCCACTGTGA GTTGTGTCTT
  CAGGTAGGGT ACACAAGGCC CCGATGTTCC TCGTCCGGGG CATTGATTTC CTTTTATAAA
  GGGCCAAGGA TGGAGGTCTA TGGGAGTCAA TGAGGAGGAA GTGGCTGCCA CTGCCGCCAC
  S
  ACCATTGAGT ATTCCCTGGA AGGTGACATG GAATTTACTG GGTCAGATGG AACTGTCAGC
  TCTGTGACCT CATAGAGTAC TTGGATGGAT CCCAAGTCTC CTGAAACTTT GTCTCAGTTA
  GGGTTCCATT GCTGTGAAGA AACGCCATGA CCAGGGAAAC TCTGATAAAG ACAACATTTA
  GTAAAGGCTG GCTTACAGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37558494	NES08912502	PERLEGEN	MM_PANEL2	f	SNP	C		G	C	C	G	C		C	C	G		G	G	C		C
ss45281671	mCV22915585	ABI	CRAMUS_MOUSE	f	SNP		C	G					C
ss148006909	ENSMUSSNP282891	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G
ss320565834	CHEV_2_153696812	CHEVERUD	SCREENING_POP	f	SNP												G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27343475					SNP	C	C	G	C	C	G	C	C	C	C	G	G	G	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37558494	NES08912502	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153712996 () rs orientation: forward

Symbol	Name	Function Class
Sun5	Sad1 and UNC84 domain containing 5	within coordinates
Tssr26917	transcription start site region 26917	4 bp upstream
Tssr26918	transcription start site region 26918	within coordinates