rs27343482 SNP Detail

Summary

• ID
  rs27343482
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153711984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGTTGTA TTTTGAATAC
  TAGATGTTTC CAGATGGGTT AAAGAATTGG TTTCCAGAGT GGTGGTTTCT GGAGTTAGGC
  CTTTAAGATG TGAGGCCTAG TAGGAAGTCC TTTAGGTCAT TGGGTGCATA TCCTGGAAAG
  GGATTGTGGG TTTCCTGTCT TTCCCCCCTT CTCTCTTTGC TTCTTGGATC ATGAAGTGAT
  Y
  GCTCTTCTCT CCATACTTTT GCCATGTCAT ATTGTCACAA AAAAACAACC AACCAGCCAA
  ACAAACAAAC ACTAGGTCCT TGATTATGGC CTAGAACTTC CAAACCTTTT CTCTTTGTAA
  GCTGATTATC ACAGGTGCTT TGTTATAGCG ATAGAACAGT CTCACATTGT GCCCAGCTAT
  GCTAACAGAG TATCAACTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37558501	NES08912495	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27343482					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37558501	NES08912495	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153711984 () rs orientation: forward

Symbol	Name	Function Class
Sun5	Sad1 and UNC84 domain containing 5	within coordinates
Tssr26917	transcription start site region 26917	997 bp downstream
Tssr26918	transcription start site region 26918	1012 bp downstream