rs27343490 SNP Detail

Summary

• ID
  rs27343490
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153711311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAGTAGG ATCTGGACTA
  GGCTGAGGCC TGGGGTGTTC ATGCGGAGAG GCAACAGAAG GGGGTCATCT GCAGAGAACA
  CAGATCACAA GGTCTCTGCC AGCCTCAGGA CATGGGCTTG CAGAGACCTG GGGCCCCCGG
  GCTTGGTGTA TGGGTCTTTG CTGCTCTACC CTGAGCTTCT CACACCAGGT CCTAGTGAAG
  Y
  CCCAGGACTC TGTCCTTGCT CACTCATGTT TGCCGGGGCT GGCTCTGCCA TTCTGCTGAT
  ATAGCTTCTT TGGACGCCCC TGAGGATGAC AAGGTTCACA GTCATATTTT ACATCGTACA
  CAATTTGTGG TGCCACCACA TTCCAGACTG AGAACCAGGG ACAGACAAGG TCTGGCTGAC
  CTCAAATAAA TTTTTTTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37558509	NES08912487	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	T	C	T	C	T		T	T	T	T		C
ss148006884	ENSMUSSNP5209195	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss320565830	CHEV_2_153695127	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27343490					SNP	C	T	C	C	T	C	T	C	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37558509	NES08912487	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153711311 () rs orientation: forward

Symbol	Name	Function Class
Sun5	Sad1 and UNC84 domain containing 5	within coordinates
Tssr26917	transcription start site region 26917	1670 bp downstream
Tssr26918	transcription start site region 26918	1685 bp downstream