rs27343725 SNP Detail

Summary

• ID
  rs27343725
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152355578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCACAAA ATGGTTGAAA
  ACCATCTGTA ACTCCAGACT CAGGGACCTG ATGCTATCTT CTGGCCTCTG CAGGCACTGA
  ATACAGATGG TACACAGACA TGCATGAAAG CAAAACACTG TACCCATAAA AATAAATAAA
  TCAGAAGAAA AGTAGTAGAG ATAGCAAATC CATCAGATAT GAATATGTAA ATGTAGGGTC
  Y
  AAAATGGGAA AGGTAACATG AAGTTTCTAG AATATTACTC TCCACAGCAG TTACAAAGGA
  AATAAACAGT CCAGAAGTTA CAGTGCAATT CATTCTACTA TAAAAGCTTT AAGTCAGTGG
  TTCTCAACCT TCCTAATGCA GCAACTCTTT AATGCAGTTG TTTTAATACA GTTTCCTCGT
  GTTGCTGCTA CTTCATAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37562445	NES08913759	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C		C	C	C	C	T	T	T	T	C
ss45263955	mCV23534173	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		C
ss147966746	ENSMUSSNP1088769	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27343725					SNP	C	C	T	C	C	C	C	C	C	C	C	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37562445	NES08913759	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152355578 () rs orientation: forward

Symbol	Name	Function Class
Defb26	defensin beta 26	1966 bp upstream
Tssr26832	transcription start site region 26832	1940 bp upstream
Tssr26833	transcription start site region 26833	1910 bp upstream
Tssr26834	transcription start site region 26834	1867 bp upstream
Tssr26835	transcription start site region 26835	1858 bp upstream