rs27343726 SNP Detail

Summary

• ID
  rs27343726
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152355548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCTAGAG GACCCAGGTT
  CGATTCCCAG AGCCCACAAA ATGGTTGAAA ACCATCTGTA ACTCCAGACT CAGGGACCTG
  ATGCTATCTT CTGGCCTCTG CAGGCACTGA ATACAGATGG TACACAGACA TGCATGAAAG
  CAAAACACTG TACCCATAAA AATAAATAAA TCAGAAGAAA AGTAGTAGAG ATAGCAAATC
  Y
  ATCAGATATG AATATGTAAA TGTAGGGTCC AAAATGGGAA AGGTAACATG AAGTTTCTAG
  AATATTACTC TCCACAGCAG TTACAAAGGA AATAAACAGT CCAGAAGTTA CAGTGCAATT
  CATTCTACTA TAAAAGCTTT AAGTCAGTGG TTCTCAACCT TCCTAATGCA GCAACTCTTT
  AATGCAGTTG TTTTAATACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37562446	NES08913758	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C		C	C	C	C	T	T	T	C
ss45303230	mCV23534172	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		C
ss147966740	ENSMUSSNP4086089	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27343726					SNP	C	C	T	C	C	C	C	C	C	C	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37562446	NES08913758	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152355548 () rs orientation: forward

Symbol	Name	Function Class
Defb26	defensin beta 26	1936 bp upstream
Tssr26832	transcription start site region 26832	1910 bp upstream
Tssr26833	transcription start site region 26833	1880 bp upstream
Tssr26834	transcription start site region 26834	1837 bp upstream
Tssr26835	transcription start site region 26835	1828 bp upstream