rs27343727 SNP Detail

Summary

• ID
  rs27343727
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152355100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATGGACCG GAAGGGAGGT
  CGTAACTACC AACCCCGTTG GCGGTAAGAG GACAGTAACT GAATGTAATA TTATAATCAC
  AATGTTTATT GATAGATGAG ATGAACCAAG ACCTTGAAAG ACATGCAAAC AACCTGACAG
  TGAAAGTTTA CCCAAACAAT CCTGTACCTG ACTCAAAAAA CTAAATTAAC AGTTTTCAAT
  M
  TTCTCTTGAA GAAAGAATCA AGCCTAAATG GTTTCAGTTG AGCAGATACG CCTCAGATCT
  GAATAGGCAG TTTTCCAAAG AAGACATATG AATGTCTGAT AAATATAAAG GGGTGTTCAG
  CTCATTAACA TTGGACTGAA TGTAAAATAA AACCACAAGG TGCTACCCCA GGAGAATGCA
  ACTTACTAAG AAGTTCACTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37562447	NES08913780	PERLEGEN	MM_PANEL2	f	SNP	A		C	A	A	A	C	C	C	C	A
ss147966730	ENSMUSSNP7059107	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27343727					SNP	A	A	C	A	A	A	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37562447	NES08913780	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152355100 () rs orientation: forward

Symbol	Name	Function Class
Defb26	defensin beta 26	1488 bp upstream
Tssr26832	transcription start site region 26832	1462 bp upstream
Tssr26833	transcription start site region 26833	1432 bp upstream
Tssr26834	transcription start site region 26834	1389 bp upstream
Tssr26835	transcription start site region 26835	1380 bp upstream