rs27343728 SNP Detail

Summary

• ID
  rs27343728
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152354947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGAAAA ATATGTCTAG
  GATAAGTAGA AGAAATGAAG TCCCAAGCAT TAAATATCAC AACACTGACA ATGGGGACTC
  AGCGATGAGC CGATGGAGGC AAGTTCATGC AGTATACGAA GCTGTAGCTG TGCCCACAGT
  GCAGATGATC ACAATATGGA CCGGAAGGGA GGTCGTAACT ACCAACCCCG TTGGCGGTAA
  R
  AGGACAGTAA CTGAATGTAA TATTATAATC ACAATGTTTA TTGATAGATG AGATGAACCA
  AGACCTTGAA AGACATGCAA ACAACCTGAC AGTGAAAGTT TACCCAAACA ATCCTGTACC
  TGACTCAAAA AACTAAATTA ACAGTTTTCA ATATTCTCTT GAAGAAAGAA TCAAGCCTAA
  ATGGTTTCAG TTGAGCAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37562448	NES08913779	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	G	G	G	G	G	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27343728					SNP	G	A	G	G	G	G	G	G	G	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37562448	NES08913779	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152354947 () rs orientation: forward

Symbol	Name	Function Class
Defb26	defensin beta 26	1335 bp upstream
Tssr26832	transcription start site region 26832	1309 bp upstream
Tssr26833	transcription start site region 26833	1279 bp upstream
Tssr26834	transcription start site region 26834	1236 bp upstream
Tssr26835	transcription start site region 26835	1227 bp upstream