rs27343736 SNP Detail

Summary

• ID
  rs27343736
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152352225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCATCTGTA ATGGGATATG ATTCCCTCTT CTAGTGTGTC
  TAAAGACAGT GACAGATATT AGTTAAATAA ACAAACAAAT CTTTTAAAAA ACAATAGGCA
  R
  GTGTTTCAAA AAACTAGTGG GACATATATT AAGACTCACA ACCACAGCAC CTGAACTCAA
  ACCCTAGGAG ACATCATTTC ACTTAGCAGA TTGTAGTCTT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37562456	NES08913886	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27343736					SNP	G	G	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37562456	NES08913886	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152352225 () rs orientation: forward

Symbol	Name	Function Class
Defb26	defensin beta 26	within coordinates
Gm75701	predicted gene, 75701	1960 bp downstream
Tssr26832	transcription start site region 26832	1401 bp downstream
Tssr26833	transcription start site region 26833	1426 bp downstream
Tssr26834	transcription start site region 26834	1471 bp downstream
Tssr26835	transcription start site region 26835	1488 bp downstream