rs27343737 SNP Detail

Summary

• ID
  rs27343737
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152352223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAATAGGC AGAGGCTGGC
  GAGATGGTTC AGCAGTTAAG AGCACTGATT GCTCTTCCAG AGGTCCTGAG TTCCATTTCC
  GGTAACCATA TGGTAGCTCA CAATCATCTG TAATGGGATA TGATTCCCTC TTCTAGTGTG
  TCTAAAGACA GTGACAGATA TTAGTTAAAT AAACAAACAA ATCTTTTAAA AAACAATAGG
  Y
  AGGTGTTTCA AAAAACTAGT GGGACATATA TTAAGACTCA CAACCACAGC ACCTGAACTC
  AAACCCTAGG AGACATCATT TCACTTAGCA GATTGTAGTC TTGGAAGATT AAAATAGAAG
  CATGAGGTGA GGGACTGGGA AGATAACATA GAACTGGTGA TGAAGAAAGC AGCCTCTGAT
  AGCGCTCTCT CTCTCTCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37562457	NES08913884	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C	C	C	C	C	T	T	C
ss147966700	ENSMUSSNP4950287	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27343737					SNP	C	C	T	C	C	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37562457	NES08913884	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152352223 () rs orientation: forward

Symbol	Name	Function Class
Defb26	defensin beta 26	within coordinates
Gm75701	predicted gene, 75701	1958 bp downstream
Tssr26832	transcription start site region 26832	1403 bp downstream
Tssr26833	transcription start site region 26833	1428 bp downstream
Tssr26834	transcription start site region 26834	1473 bp downstream
Tssr26835	transcription start site region 26835	1490 bp downstream