rs27345830 SNP Detail

Summary

• ID
  rs27345830
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165586751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGAAGGAT TGCTACCGTA
  ATGTACAAAG AGCAGGCAAC ATGGGGTGCT GGTGGGGACA GGGGTGGTCC CGTCTATCCC
  TGTGTGTTCA AAGCACTCTG TAGATACACC AGGCTACACT GTCATCCCAC GCCTCTCCAT
  CCTGGACCGT CCTGGAACCG GCTCATGTTA GAGTGATGGT CTCAGCCTGG CTTTCAAAGT
  Y
  TTCCCACTTG CAATGGAGAC AGCGTACAGG GGAAACAAGA TGGAGTCCGC GGCCTCCTCT
  GTGCTTCTGG CTTTGGGTTT CTGGTCTTGG ACTGAGTGAA AAATGCCACA TCTAGAAGGC
  ATTGTGTTCG TTAAACATAA ACGACTTAAA GCCAATAACA GTCCATGTGC TGTGAAGCTA
  CCTGACACCC AGAGAGCGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37513375	NES08878478	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27345830					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37513375	NES08878478	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165586751 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eya2	EYA transcriptional coactivator and phosphatase 2			Intron
				Noncoding-Transcript-Variant
Rr569993	regulatory region 569993			16 bp proximal