rs27347443 SNP Detail

Summary

• ID
  rs27347443
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153856178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTGCAGG AAACTAGGAT
  TCGGGCCTCC CCAAAGGCTT CAGCCTGCTG AGGATCTTAA AGTTCTGGGG TTCAAGAGTT
  CAAGGTTTTT AGGAGCGTGG GGTATTAGGG TTCTGGATGC TAGATTGTCG GATTCTGAAC
  TTCTGATATC CTGAGATGGC AGGTTCTTAG TAGCCTGGGA CAGTTCGGAT TCAGGTTGCC
  R
  CAATTACATA GATCCAGATT GCAAAGTTAA CTGTTCTCAG ATCCTGGAAA TTAGTCCCCC
  TGTTTGTGGG TAAGTGGGCA ATGTGTTCCC AGCAAAGTCT CATTTGTGTT CCTTCTTTTT
  CTCCTTCTAC CTCCTCCCAC CTTCTTTTTG TCTTTCAGCT ATGTCCATTG CTTCAGTACG
  TCCTCAGCAC ACTGAATCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37557184	NES08908429	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	A	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27347443					SNP	G	G	G	A	G	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37557184	NES08908429	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153856178 () rs orientation: forward

Symbol	Name	Function Class
Bpifa2	BPI fold containing family A, member 2	within coordinates
D2Mit511	DNA Segment, Chr 2, Massachusetts Institute of Technology-511	1720 bp distal
Tssr20962	transcription start site region 20962	571 bp downstream
Tssr20963	transcription start site region 20963	529 bp downstream
Tssr20964	transcription start site region 20964	655 bp upstream
Tssr20965	transcription start site region 20965	675 bp upstream
Tssr20966	transcription start site region 20966	1689 bp upstream
Tssr26920	transcription start site region 26920	1707 bp downstream
Tssr26921	transcription start site region 26921	1728 bp downstream