rs27347453 SNP Detail

Summary

• ID
  rs27347453
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153855139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTCTAGGCA GACATTGTTC TAAGCTCTGG AGAACAATTT
  GGTGAAAACA TAGGCTCTCT GCTTCATAGA ACATATTATG AGGAAAAGGC ATGCAGAAAA
  R
  TATTTGGTCT GTCCATGAGT TCAAGAACAA TGAAGAGCTC TACACAGACC ATCATACTTT
  GTGGGGCATA GTATGAAACC CCTCCCTTCA GTGCACACT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37557194	NES08908418	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	G	A	G	A		A	A	A	G		G
ss148015825	ENSMUSSNP1801674	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A					A
ss320567623	CHEV_2_153838955	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27347453					SNP	G	G	A	G	A	G	G	A	G	A	A	A	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37557194	NES08908418	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153855139 () rs orientation: forward

Symbol	Name	Function Class
Bpifa2	BPI fold containing family A, member 2	within coordinates
D2Mit511	DNA Segment, Chr 2, Massachusetts Institute of Technology-511	681 bp distal
Tssr20958	transcription start site region 20958	1843 bp downstream
Tssr20959	transcription start site region 20959	1801 bp downstream
Tssr20960	transcription start site region 20960	1768 bp downstream
Tssr20961	transcription start site region 20961	1761 bp downstream
Tssr20962	transcription start site region 20962	455 bp upstream
Tssr20963	transcription start site region 20963	489 bp upstream
Tssr20964	transcription start site region 20964	1694 bp upstream
Tssr20965	transcription start site region 20965	1714 bp upstream