rs27348099 SNP Detail

Summary

• ID
  rs27348099
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153795517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTTGGGTTT TTGGACCCCA AGTTTCTCTG GGAAAACATC
  CTGAAAATCT CTATGAATAA CCAGTTGGCC AAATGTCTGA TTAGTTGGTG TTCATGACCT
  W
  TTTGTTCATG GACCAAGAGT TCGTACAGAA GACTATCAGC CCTCTTGTGT CTTCTTAGGC
  ATAATCGCCC TCATCCGAGC CATGAGCAAA ATCTGCTTG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37557618	NES08909704	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	A	A	A		A	A	A	A		T
ss148011276	ENSMUSSNP6306515	ENSEMBL	ENSEMBL_Sanger	f	SNP		A			A
ss320566744	CHEV_2_153779333	CHEVERUD	SCREENING_POP	f	SNP							A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27348099					SNP	T	A	T	A	A	A	A	A	A	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37557618	NES08909704	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153795517 () rs orientation: forward

Symbol	Name	Function Class
Bpifb4	BPI fold containing family B, member 4	Intron
Rr567759	regulatory region 567759	276 bp distal
Rr567760	regulatory region 567760	504 bp distal
Rr567761	regulatory region 567761	399 bp proximal