rs27348100 SNP Detail

Summary

• ID
  rs27348100
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153795213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCATGAGAC TGCCCCAGAA TCCCCTCTTT CATTGGGAGA
  CAGATCCTGT TCTCAGCTGG GCAACAGACA CAGAGAGATC ACACAGAAGT CAGAGCCCGT
  W
  TACAAGAACA CAGGGCTTTA AATGGCTCAA GATGGTCTCA GGAGTTAAAG CTAGACAAGG
  TGGCAAGTGA CATGAGCCAT AGAGAGCAGC TTGACCAAA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37557619	NES08909703	PERLEGEN	MM_PANEL2	f	SNP	T	A	T		T	T		T	T	T	T		A
ss45237314	mCV23547311	ABI	CRAMUS_MOUSE	f	SNP	T			A	T
ss148011256	ENSMUSSNP4246573	ENSEMBL	ENSEMBL_Sanger	f	SNP	T				T
ss320566743	CHEV_2_153779029	CHEVERUD	SCREENING_POP	f	SNP							T					A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27348100					SNP	T	A	T	A	T	T	T	T	T	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37557619	NES08909703	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153795213 () rs orientation: forward

Symbol	Name	Function Class
Bpifb4	BPI fold containing family B, member 4	Intron
Rr567759	regulatory region 567759	within coordinates
Rr567760	regulatory region 567760	200 bp distal
Rr567761	regulatory region 567761	703 bp proximal