rs27348101 SNP Detail

Summary

• ID
  rs27348101
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153795180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGATCACTT CTTGTGCACC CTGCCCCTGA TATCTCATGA
  GACTGCCCCA GAATCCCCTC TTTCATTGGG AGACAGATCC TGTTCTCAGC TGGGCAACAG
  R
  CACAGAGAGA TCACACAGAA GTCAGAGCCC GTATACAAGA ACACAGGGCT TTAAATGGCT
  CAAGATGGTC TCAGGAGTTA AAGCTAGACA AGGTGGCAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37557620	NES08909702	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G		G	G		G	G	G	G
ss45355850	mCV23547310	ABI	CRAMUS_MOUSE	f	SNP		G			A	G
ss148011251	ENSMUSSNP5975697	ENSEMBL	ENSEMBL_Sanger	f	SNP		G				G
ss320566742	CHEV_2_153778996	CHEVERUD	SCREENING_POP	f	SNP								G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27348101					SNP	A	G	A	G	A	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37557620	NES08909702	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153795180 () rs orientation: forward

Symbol	Name	Function Class
Bpifb4	BPI fold containing family B, member 4	Intron
Rr567759	regulatory region 567759	within coordinates
Rr567760	regulatory region 567760	167 bp distal
Rr567761	regulatory region 567761	736 bp proximal