rs27348106 SNP Detail

Summary

• ID
  rs27348106
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153794443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGACAAT AATGACACTG
  GGAATGGCTT TGCCTCTTCA TTTGGGCAGG TTTCTCACCT GGCTCCCTGG GGCTCAGGAT
  GGGTGTGGAT ACCAGATTCT GGTGAGGGGA CATAAGAGGG TCAAGGATGA CATACCCTGA
  ACCCTGGTGT GATGGGCCTG CCTGCACAGT CTTGCCTTGG CCTGGCTACT CCTGGGCTGG
  R
  TGACTATGCA GTGATGGAGT TTCAGCTCAG GTTCTTGCAT ATGTCAGACA AGTGCTCTCC
  CCTCTGTGTG ACTTTGGACA TAGTCTTAGC ATTTCTGAGT TTATTTTTCT CAGTTGTAGA
  AAAAGACTCG TCCAGGTTGT CCAGAGGGTC AGCCAGGGCT GGGCACACAC AAACACAGGG
  CAGTTCTGGA GGAGTTGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss37557625	NES08909745	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs27348106					SNP	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37557625	NES08909745	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153794443 () rs orientation: forward

Symbol	Name	Function Class
Bpifb4	BPI fold containing family B, member 4	Intron
Rr567759	regulatory region 567759	341 bp proximal
Rr567760	regulatory region 567760	549 bp proximal
Rr567761	regulatory region 567761	1473 bp proximal