rs27348110 SNP Detail

Summary

• ID
  rs27348110
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153794275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGTGCTCTG CAGTTTTAAG TGGTGCCCCT TTGGTTAAGT
  GAAAACAAGA GTCATGGCTG GAGGCCTTTG CAGACAATAA TGACACTGGG AATGGCTTTG
  S
  CTCTTCATTT GGGCAGGTTT CTCACCTGGC TCCCTGGGGC TCAGGATGGG TGTGGATACC
  AGATTCTGGT GAGGGGACAT AAGAGGGTCA AGGATGACAT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	PWD/PhJ	WSB/EiJ
ss37557629	NES08909741	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	PWD/PhJ	WSB/EiJ
rs27348110					SNP	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37557629	NES08909741	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153794275 () rs orientation: forward

Symbol	Name	Function Class
Bpifb4	BPI fold containing family B, member 4	Intron
Rr567759	regulatory region 567759	509 bp proximal
Rr567760	regulatory region 567760	717 bp proximal
Rr567761	regulatory region 567761	1641 bp proximal