rs27348111 SNP Detail

Summary

• ID
  rs27348111
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153794175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTTGATTCC CAAGGTATGT AAGCAATCCC AATGGTGTCC
  CTGTCTCTAG CTTCTTTTCT GTCCGGAGGG GAATGTCTCC ATGTCACTGG AATATATAAT
  Y
  GGTGCTCTGC AGTTTTAAGT GGTGCCCCTT TGGTTAAGTG AAAACAAGAG TCATGGCTGG
  AGGCCTTTGC AGACAATAAT GACACTGGGA ATGGCTTTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37557630	NES08909740	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	C	T	T		T	C		C	C	C	T		T
ss148011211	ENSMUSSNP6109081	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
ss320566733	CHEV_2_153777991	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27348111					SNP	T	T	C	T	T	C	T	T	C	T	C	C	C	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37557630	NES08909740	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153794175 () rs orientation: forward

Symbol	Name	Function Class
Bpifb4	BPI fold containing family B, member 4	Intron
Rr567759	regulatory region 567759	609 bp proximal
Rr567760	regulatory region 567760	817 bp proximal
Rr567761	regulatory region 567761	1741 bp proximal