rs27348117 SNP Detail

Summary

• ID
  rs27348117
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153793475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGAGCTAT TTAAAACAAA
  ACAACACAAC AGCAACAACA ACAACAACAA AAACAACAAC AACATCACTA CCCAAAACAT
  GGGAATCTGT AATTCTTCCA AGAAAAAAGT GTCCACTTAG GTTCAGGGCA GCTAGCATTC
  TTGCAGAGTT ATAACATGTG ACCAGGGCCC TGCCTTGATA GTGCAACCAT GCAGGAGGCA
  R
  TGACTTTGCT TGATCTGCTG CATTGGTTCC ATGGTCTCTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCTCTCTCTC TCTTTCTCCC CCATCCCTCC CTCCCTCCTT CCCTCCCCTC
  CTCTTCTTCT CCTCCACAAT CCTCTATTTC TGACAAGTGG TACTGCCTTT CATTCTTGAG
  GTTTTAGGAA GTGGGTAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37557636	NES08909760	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27348117					SNP	A	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37557636	NES08909760	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153793475 () rs orientation: forward

Symbol	Name	Function Class
Bpifb4	BPI fold containing family B, member 4	Intron
Rr567759	regulatory region 567759	1309 bp proximal
Rr567760	regulatory region 567760	1517 bp proximal