rs27348123 SNP Detail

Summary

• ID
  rs27348123
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153792882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGTTGGTC AACATGCATA
  CACAAATAAT CAAAAGAGGC ATGAAAACAA AACACTAGCC TCCTGGAGAA GCCACTCTCT
  CTGCCCTTTA ACAGATTTCC GATCTTCAAA ACAGCTGCAG TGCAGTGCAG TCATGCTTAT
  TCATGCTTCA CCCAGTTTAC CAAATCCTAT TTTGCCACAT GCAAATCATA TCTATCTATT
  M
  AGATACCGTC CTTCTGACTT GCCCAACCTC TCATCCACCC ACTGTTCATC CACTCCTTCA
  TTCACCATTT ATCCATGCAC TTTCCATCCA TCCCTCCATC CCTCCATCTC TCCATCCATC
  CATCCATCCA TCCACCCATC CATTCATCTA TTACCCAAAC ACCCATTCAT TATTTCTCAG
  CCTATCTACC CATCCATTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NZW/LacJ	WSB/EiJ
ss37557642	NES08909780	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NZW/LacJ	WSB/EiJ
rs27348123					SNP	C	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37557642	NES08909780	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153792882 () rs orientation: forward

Symbol	Name	Function Class
Bpifb4	BPI fold containing family B, member 4	Intron
Rr567759	regulatory region 567759	1902 bp proximal