rs27348216 SNP Detail

Summary

• ID
  rs27348216
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164297055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCCCGCTC TCGTTTCCAT
  TCTAAGAAAG GAACTCACTG GCCAAAGTCC AGGACAGTCA GTGATGTGGA GAACAGGAAC
  CCATGCCAAC CTCCCACACG GAGTTTCCAA AAAGTGTGAG CGCAGCATTG CGTAACCTGT
  CCTAGGACGT GCCTTCAGAG AACTTCCACA AACTAGTCCC CAAAAGGAAA CGTGAGCAGA
  R
  CCGTGGAGTA ACCTCCGGAG GGAGGAGGAT GGGAGCTGAA GTGTGGGGTT GAGATTGGAG
  AGAGAAGCCG CTGGCCCTGG TGCCACCAGT TTGTCCTCTG AGCTATGCCA GAGGCTGAGA
  CAGGAGGATC ACAAGTTCAA AGCCTGCCGG AAGTACAAAA AGAATTGCAG AGTCAGCCTG
  GGCTACATAG TGAGACTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37517351	NES08888301	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27348216					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37517351	NES08888301	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164297055 () rs orientation: forward

Symbol	Name	Function Class
Rr397476	regulatory region 397476	1690 bp upstream
Rr569621	regulatory region 569621	1459 bp distal
Rr569622	regulatory region 569622	within coordinates
Rr569623	regulatory region 569623	1351 bp proximal
Rr569624	regulatory region 569624	1852 bp proximal
Sys1	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	1829 bp upstream
Tssr21592	transcription start site region 21592	1801 bp upstream